Installation

  • Complete GUI version
    No installation required.
  • Light GUI version
    Required command line version SASTBX has been exist on your machine.
  • command line version
    No installation required.
  • source code
    If you want to manually compile the command line version software form source code. The installation is required. (For developers who add the new command or change the C++ code. The changes in python script can take effect immediately when executing.)

Manually compile from source code on Ubuntu

Attention: For developers who add the new command or change the C++ code, manually compiling is necessary. For developers who only change the python script, recommend you using command version without compiling.

soure code can be downloaded on http://liulab.csrc.ac.cn/dokuwiki/doku.php?id=sastbx

In the flowing procedure, the lines that are in the block are what you will type in command line.

  • step1 Unpack the compressed SASTBX file

    tar -xjvf source_code_ubuntu.tar.gz

  • step2 Configure the environment variables

The installation procedure should be executed in another directory, so make an empty directory to execute the installation.

cd SASTBX_PATH/
mkdir build

Recommend you organize the directory like this:

SASTBX_PATH(the directory saved source code and executed space)
* build
* modules

Attention :

SASTBX_PATH

is the path where the sastbx file exit, change it to your own path

example:

cd /usr/test/Documents/software/sastbx/build

usr/test/Documents/software/sastbx is the SASTBX_PATH in the example

Then generate the environment variables:

/your/choice/bin/python ../modules/libtbx/configure.py sastbx

A list of files will generate in build directory Then configure the environment variables. Then make the environment variables take effect. To compiler enter:

make

If you want to use multiple CPUs, you can specify the number of CPU, for example, enter:

make -j 4
  • step3: vertify

Type:

sastbx.python

in the command line, if you can enter the python process, the installation is success.

  • step4 add the environment variable

Add one line in your .bashrc.

Open the .bashrc file

vim ~/.bashrc

Then add the following command it.

source sastbx_path/build/setpaths_all.sh

change the sastbx_path to the real path in you machine.

To make it effective, type:

source ~/.bashrc

in the command line.

Manually building from sources on MacOS

Attention: For developers who add the new command or change the C++ code, manually compiling is necessary. For developers who only change the python script, recommend you using command version without compiling.

soure code can be downloaded on http://liulab.csrc.ac.cn/dokuwiki/doku.php?id=sastbx

In the flowing procedure, the lines that are in the block are what you will type in command line.

  • step1 Unpack the compressed SASTBX file

    tar -xjvf source_code_ubuntu.tar.gz

  • step2 Configure the environment variables

The installation procedure should be executed in another directory, so make an empty directory to execute the installation.

cd SASTBX_PATH/
mkdir build

Recommend you organize the directory like this:

SASTBX_PATH(the directory saved source code and executed space)
* build
* modules

Attention :

SASTBX_PATH

is the path where the sastbx file exit, change it to your own path

example:

cd /usr/test/Documents/software/sastbx/build

usr/test/Documents/software/sastbx is the SASTBX_PATH in the example

Then generate the environment variables:

/your/choice/bin/python ../modules/cctbx_project/libtbx/configure.py sastbx

A list of files will generate in build directory Then configure the environment variables. Then make the environment variables take effect. To compiler enter:

make

If you want to use multiple CPUs, you can specify the number of CPU, for example, enter:

make -j 4
  • step3: vertify

Type:

sastbx.python

in the command line, if you can enter the python process, the installation is success.

  • step4 add the environment variable

Add one line in your .bash_profile.

Open the .bash_profile file

vim ~/.bash_profile

Then add the following command it.

source sastbx_path/build/setpaths_all.sh

change the sastbx_path to the real path in you machine.

To make it effective, type:

source ~/.bash_profile

in the command line.